PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019277m
Common NameCARUB_v10019277mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 282aa    MW: 31702.2 Da    PI: 4.4667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019277mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.22e-2013101197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv++++++  s  + +p +f+e+   +   + t +l+ + gr W+v++  +k ++++++t+GW++F+++++L +g+f++F +dg+++f   v
  Carubv10019277m  13 FFKVFLSESA--SESFAIPLSFMEHLADP--LPNTAKLQGTGGRDWTVNM--TKIRDGVYFTAGWSKFAQDHELVDGEFLTFVYDGHRTF--EV 98 
                      8999955555..5558*******666655..889****************..********************************998888..77 PP

                      EEE CS
               B3  95 kvf 97 
                      +vf
  Carubv10019277m  99 SVF 101
                      776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.40811104IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-2311105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-2311103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-1911101No hitNo description
SMARTSM010191.2E-2013104IPR003340B3 DNA binding domain
PfamPF023622.6E-1713101IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-7183277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-5183278IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.11187276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAEHDDDVLL PRFFKVFLSE SASESFAIPL SFMEHLADPL PNTAKLQGTG GRDWTVNMTK  60
IRDGVYFTAG WSKFAQDHEL VDGEFLTFVY DGHRTFEVSV FGRLGCKETR AEVEAIAVDG  120
SSSDSDGSSS DSEEERELSM DFYGDTSLGE DEEISQSLYP LEDEETESDS AVVEGNLDIE  180
ALTNPHFSTT LKNRIYELLI PANVVKENKL TFGDSVKYID GEGTLVGLRG KWADDRICFK  240
GWDRICRRNR LKKHQDTVEC ELLHDRNKVH SIRVHIMRGT T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-221210610104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293000.10.0hypothetical protein CARUB_v10019277mg
SwissprotQ8LAV51e-132REM20_ARATH; B3 domain-containing protein REM20
TrEMBLR0HPM70.0R0HPM7_9BRAS; Uncharacterized protein
STRINGscaffold_502422.11e-143(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-129B3 family protein